Have you tried connecting the Marantz to the Amp without the crossover? It could also be a bad cable. XLR cables are pretty tough but they can have issues. It could also be a bad connector socket. Try connecting one signal cable at a time (power off) and see if one produces the noise. You could also try the RCA input for signal connect. Is your sub powered from the Furman too? Can you ground the Marantz to the Furman with a piece of speaker wire just to check if the noise goes away (the Furman might have a lug for just that purpose). If you have already tried all this I would steer toward the crossover being the issue and then the Marantz and then the Furman since the amp has no noise with no input.
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Music system
Model 990/7500/Magnepan 1.6 QRs/Technics SL1200 MK2/Aperion S-12 Subwoofer/OWA3/Sony NS75H DVD
APC H15 Power Conditioner

TV System
Large Advent Loudspeakers/ Polk center/Monoprice surrounds/Panasonic Viera 42 inch/Onkyo HT-RC260/Sony BDP S590/Directv


Home Theater System
Onkyo PR-SC886/Outlaw 7125 Klipsch RF-82 L/R,RC-62 center, RB-35 SR/SL, BENQ HT1075, Outlaw LFM1-EX/OPPO BDP-83/Directv
Harmony ONE
Blue Jeans and Monoprice interconnects
APC H15 Power Conditioner